The Iron Duke 4 cyl in the Cj's use a 90 deg bellhousing the same as the 4.3. The later 4 cyl engines in XJ and YJ are a 60 deg bellhousing and it matches up to the 2.8/3.4 V6's.
Yes it will bolt up as long as it is a Iron DUke engine! Is the intake on one side and the exhaust on the other? if so it is a Iron Duke GM 4 cyl.
You will need to keep the Iron Duke flywheel and starter! these will bolt up to the 4.3 V6. I have done these swaps!